HHS.gov
NHLBI last updated on: August 25, 2015
Font Size: increase font decrease font Reset
Home Centers News & Events Publications Newsletter Resources Links Contact Us Login
Homepage > Resources and Tools
NHLBI Proteomics Administrative and Coordination Center

Resources and Tools

Omics Integration in Biology and Medicine Workshop (Day 1)
Tuesday, June 19, 2012
The focus of this meeting will be on the emerging field of integrating disparate omic data from genomics, proteomics, glycomics, etc. in order to better understand key biological processes and also improve clinical practice. Specifically, discussants will consider how to translate the myriad of data available through cutting edge technologies for a single sample onto clinical needs of a population.

Omics Integration in Biology and Medicine Workshop (Day 2)
Wednesday, June 20, 2012
The focus of this meeting will be on the emerging field of integrating disparate omic data from genomics, proteomics, glycomics, etc. in order to better understand key biological processes and also improve clinical practice. Specifically, discussants will consider how to translate the myriad of data available through cutting edge technologies for a single sample onto clinical needs of a population.

Census - Software Tool for Quantitative Analysis 
High-throughput mass spectrometry data from shotgun proteomics experiments necessitate an efficient and automated way to analyze large amounts of quantitative data.

Software tool for researching annotations of proteins: open-source protein annotation software with data visualization
Dr. Catherine E. Costello and Dr. Mark E. McComb, Boston University Cardiovascular Proteomics Center.

The Cardiac Organellar Protein atlas Knowledgebase (COPaKB): released in summer 2011
Dr. Peipei Ping, UCLA Proteomics Center, Global Proteomics Initiative of Cardiovascular Medicine.

SILAC - Stable isotope labeling with amino acids in cell culture 
Dr. Pandey, Johns Hopkins Proteomics Center.

PPC: Peak Probability Contrasts Class Prediction Software for Protein Mass Spectometry Data

Dr. Robert Tibshirani, Stanford University.

Development of Semantic Web Technologies for Protemics Research: Resource Description Framework (RDF), DLG2, and ontologies for 2D Gel data (BOSS, CCBase, CCGel)
Charleston Proteomics Center.

DeNovoID is a program that has been specifically designed to use degenerate amino acid sequence and mass data derived from MS experiments to search a peptide database.
Dr. Simon N. Twigger, Medical College of Wisconsin-Proteomics Center.

Proteomics Informatics Course
Dr. Jimmy Eng, Seattle Proteome Center (SPC).

The Need for Guidelines in Publication of Peptide and Protein Identification Data
Carr et al. Mol Cell Proteomics, 2004;3: 531-533.

Revised draft guidelines for proteomic data publication
Bradshaw RA. Mol Cell Proteomics, 2005;4:1223-5.


Not logged in   |   Log In
National Heart Lung and Blood Institute National Heart, Lung, and Blood Institute National Institutes of Health National Institutes of Health Department of Health and Human Services Department of Health and Human Services
hhs.gov