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NHLBI Proteomics Administrative and Coordination Center

Selected Recent Publications

Boston University School of Medicine Cardiovascular Proteomics Center

Endomembrane HRas controls vascular endothelial growth factor-induced nitric oxide synthase-mediated endothelial cell migration. Haeussler DJ, Pimentel DR, Hou X, Burgoyne JR, Cohen RA, Bachschmid MM.
J Biol Chem. 2013 Apr 2.

Energy-dependent electron activated dissociation of metal-adducted permethylated oligosaccharide.Yu X, Huang Y, Lin C, Costello CE.
Anal Chem. 2012 Sep 4;84(17):7487-94.

Top-Down Study of β(2)-Microglobulin Deamidation. Li X, Yu X, Costello CE, Lin C, O'Connor PB.
Anal Chem. 2012 Jul 17;84(14):6150-7.

Autocatalytic Nitration of Prostaglandin Endoperoxide Synthase-2 by Nitrite Inhibits Prostanoid Formation in Rat Alveolar Macrophages.
Schildknecht S, Karreman C, Daiber A, Zhao C, Hamacher J, Perlman D, Jung B, van der Loo B, O'Connor P, Leist M, Ullrich V, Bachschmid MM.
Antioxid Redox Signal. 2012 Nov 15;17(10):1393-406.

The polyphenols resveratrol and S17834 prevent the structural and functional sequelae of diet-induced metabolic heart disease in mice. Qin F, Siwik DA, Luptak I, Hou X, Wang L, Higuchi A, Weisbrod RM, Ouchi N, Tu VH, Calamaras TD, Miller EJ, Verbeuren TJ, Walsh K, Cohen RA, Colucci WS.
Circulation. 2012 Apr 10;125(14):1757-64, S1-6. 

Johns Hopkins University Proteomics Innovation Center in Heart Failure

Characterization of the cardiac myosin binding protein-C phosphoproteome in healthy and failing human hearts.
Kooij V, Holewinski RJ, Murphy AM, Van Eyk JE.
J Mol Cell Cardiol.
Apr 22;60C:116-120.

Optimized method for identification of the proteomes secreted by cardiac cells. Stastna M, Van Eyk JE.
Methods Mol Biol. 2013;1005:225-35.

Using pure protein to build a multiple reaction monitoring mass spectrometry assay for targeted detection and quantitation. Grote E, Fu Q, Ji W, Liu X, Van Eyk JE.
Methods Mol Biol. 2013;1005:199-213.

Constrained selected reaction monitoring: Quantification of selected post-translational modifications and protein isoforms. Liu X, Jin Z, O'Brien R, Bathon J, Dietz HC, Grote E, Van Eyk JE.
Methods. 2013 Mar 22.

Improved protein extraction and protein identification from archival formalin-fixed paraffin-embedded human aortas. Fu Z, Yan K, Rosenberg A, Jin Z, Crain B, Athas G, Heide RS, Howard T, Everett AD, Herrington D, Van Eyk JE.
Proteomics Clin Appl. 2013 Apr;7(3-4):217-24.

Harvard Broad Proteomics Center

Diagnostic evaluation of the MRP-8/14 for the emergency assessment of chest pain. Vora AN, Bonaca MP, Ruff CT, Jarolim P, Murphy S, Croce K, Sabatine MS, Simon DI, Morrow DA.
J Thromb Thrombolysis. 2012 Aug;34(2):229-34.

Prospective evaluation of pregnancy-associated plasma protein-a and outcomes in patients with acute coronary syndromes. Bonaca MP, Scirica BM, Sabatine MS, Jarolim P, Murphy SA, Chamberlin JS, Rhodes DW, Southwick PC, Braunwald E, Morrow DA.
J Am Coll Cardiol. 2012 Jul 24;60(4):332-8.

The human proteome - a scientific opportunity for transforming diagnostics, therapeutics, and healthcare.
Vidal M, Chan DW, Gerstein M, Mann M, Omenn GS, Tagle D, Sechi S; Workshop Participants.
Clin Proteomics. 2012 Jul 3;9(1):6.

Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma. Kuhn E, Whiteaker JR, Mani DR, Jackson AM, Zhao L, Pope ME, Smith D, Rivera KD, Anderson NL, Skates SJ, Pearson TW, Paulovich AG, Carr SA.
Mol Cell Proteomics. 2012 Jun;11(6):M111.013854.

Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
Mol Cell Proteomics. 2012 May;11(5):148-59.


Stanford University Proteomics Center

COP9 signalosome component JAB1/CSN5 is necessary for T cell signaling through LFA-1 and HIV-1 replication. Kinoshita SM, Krutzik PO, Nolan GP.
PLoS One. 2012;7(7):e41725.

Correction: Autoantibody Epitope Spreading in the Pre-Clinical Phase Predicts Progression to Rheumatoid Arthritis. Sokolove J, Bromberg R, Deane KD, Lahey LJ, Derber LA, Chandra PE, Edison JD, Gilliland WR, Tibshirani RJ, Norris JM, Holers VM, Robinson WH.
PLoS One. 2012;7(8).

Decoupling of tumor-initiating activity from stable immunophenotype in HoxA9-Meis1-driven AML. Gibbs KD Jr, Jager A, Crespo O, Goltsev Y, Trejo A, Richard CE, Nolan GP.
Cell Stem Cell. 2012 Feb 3;10(2):210-7.

Patchy deletion of Bmpr1a potentiates proximal pulmonary artery remodeling in mice exposed to chronic hypoxia. Vanderpool RR, El-Bizri N, Rabinovitch M, Chesler NC.
Biomech Model Mechanobiol 2012; Feb 8. [Epub ahead of print]

Inhibition of epidermal growth factor receptor tyrosine kinase ameliorates collagen-induced arthritis. Swanson CD, Akama-Garren EH, Stein EA, Petralia JD, Ruiz PJ, Edalati A, Lindstrom TM, Robinson WH.
J Immunol. 2012 Apr 1;188(7):3513-21.

UTHSCSA Proteomics Center

Matrix metalloproteinase (MMP)-9: A proximal biomarker for cardiac remodeling and a distal biomarker for inflammation. Halade GV, Jin YF, Lindsey ML.
Pharmacol Ther. 2013 Apr 3.

Using proteomics to uncover extracellular matrix interactions during cardiac remodeling. Patterson NL, Iyer RP, Bras LD, Li Y, Andrews TG, Aune GJ, Lange RA, Lindsey ML.
Proteomics Clin Appl. 2013 Mar 27.

Left Ventricular Remodeling: One Small Step for the Extracellular Matrix Will Translate to a Giant Leap for the Myocardium. Yabluchanskiy A, Chilton RJ, Lindsey ML.
Congest Heart Fail. 2013 Jan 25.

Matrix metalloproteinases: drug targets for myocardial infarction. Yabluchanskiy A, Li Y, Chilton RJ, Lindsey ML.
Curr Drug Targets. 2013 Mar;14(3):276-86.

Matrix metalloproteinase-28 deletion exacerbates cardiac dysfunction and rupture after myocardial infarction in mice by inhibiting M2 macrophage activation. Ma Y, Halade GV, Zhang J, Ramirez TA, Levin D, Voorhees A, Jin YF, Han HC, Manicone AM, Lindsey ML.
Circ Res. 2013 Feb 15;112(4):675-88.

UTMB Proteomics Center at Galveston

Mechanosensitive Ca ( 2+) permeant cation channels in human prostate tumor cells. Maroto R, Kurosky A, Hamill OP.
Channels (Austin). 2012 Jul 1;6(4):290-307.

Arsenal of elevated defense proteins fails to protect tomato against Verticillium dahliae.
Robb J, Shittu H, Soman KV, Kurosky A, Nazar RN.
Planta. 2012 Aug;236(2):623-33. 

Activation of ras signaling pathway by 8-oxoguanine DNA glycosylase bound to its excision product, 8-oxoguanine. Boldogh I, Hajas G, Aguilera-Aguirre L, Hegde ML, Radak Z, Bacsi A, Sur S, Hazra TK, Mitra S.
J Biol Chem. 2012 Jun 15;287(25):20769-73.

Model studies on iTRAQ modification of peptides: sequence-dependent reaction specificity. Wiktorowicz JE, English RD, Wu Z, Kurosky A.
J Proteome Res. 2012 Mar 2;11(3):1512-20.

Role of human DNA glycosylase Nei-like 2 (NEIL2) and single strand break repair protein polynucleotide kinase 3'-phosphatase in maintenance of mitochondrial genome. Mandal SM, Hegde ML, Chatterjee A, Hegde PM, Szczesny B, Banerjee D, Boldogh I, Gao R, Falkenberg M, Gustafsson CM, Sarkar PS, Hazra TK.
J Biol Chem. 2012 Jan 20;287(4):2819-29.


UCLA Proteomics Center

Regulation network analysis of testicular seminoma at various stages of progression. Sha JJ, Dong YH, Liu DM, Bo JJ, Huang YR, Li Z, Ping P.
Genet Mol Res. 2013 Mar 11;12

A novel spectral library workflow to enhance protein identifications. Li H, Zong NC, Liang X, Kim AK, Choi JH, Deng N, Zelaya I, Lam M, Duan H, Ping P.
J Proteomics. 2013 Apr 9;81:173-84.

Site-specific quantitative analysis of cardiac mitochondrial protein phosphorylation. Lam MP, Lau E, Scruggs SB, Wang D, Kim TY, Liem DA, Zhang J, Ryan CM, Faull KF, Ping P.
J Proteomics. 2013 Apr 9;81:15-23. 

Metabolic Labeling Reveals Proteome Dynamics of Mouse Mitochondria. Kim TY, Wang D, Kim AK, Lau E, Lin AJ, Liem DA, Zhang J, Zong NC, Lam MP, Ping P.
Mol Cell Proteomics. 2012 Aug 21.

ABCC6 Localizes to the Mitochondria-Associated Membrane. Martin LJ, Lau E, Singh H, Vergnes L, Tarling EJ, Mehrabian M, Mungrue I, Xiao S, Shih D, Castellani L, Ping P, Reue K, Stefani E, Drake TA, Bostrom K, Lusis AJ.
Circ Res. 2012 Aug 17;111(5):516-20.

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